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1. breseq breseq Public

   breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq …

   C++ 185 23

2. LTEE-Ecoli LTEE-Ecoli Public

   Genomics resources for the Long-Term Evolution Experiment with E. coli

   GAP 19 5

3. ostir ostir Public

   Software for predicting translation initiation rates in bacteria

   Python 33 9

4. pLannotate pLannotate Public

   Forked from mmcguffi/pLannotate

   Webserver and command line tool for annotating engineered plasmids

   Python 17 4

5. brefito brefito Public

   Snakemake pipelines for analyzing resequenced bacterial genomes

   Python 3 1