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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 15 6

  2. dms_tools2 dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 35 20

  3. dmslogo dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 12 1

  4. neutcurve neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 3

Repositories

Showing 10 of 148 repositories
  • flu_seqneut_pdmH1N1_2023-2024_VaccinatedCohorts Public

    Sequencing-based neutralization assays to measure specificity of vaccine response to HAs from H1N1 strains circulating in 2023-2024

    jbloomlab/flu_seqneut_pdmH1N1_2023-2024_VaccinatedCohorts’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 17, 2026
  • seqneut-pipeline Public

    Pipeline for analyzing sequencing-based neutralization assays

    jbloomlab/seqneut-pipeline’s past year of commit activity
    Python 1 MIT 2 0 0 Updated Apr 14, 2026
  • SARS2-spike-pango Public

    Spike protein sequences and tree of different SARS-CoV-2 Pango lineages

    jbloomlab/SARS2-spike-pango’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 13, 2026
  • nextstrain-prot-titers-tree Public

    Build interactive `nextstrain` trees on protein sequences designed to display neutralization titer values

    jbloomlab/nextstrain-prot-titers-tree’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Apr 10, 2026
  • phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    jbloomlab/phydms’s past year of commit activity
    HTML 15 GPL-3.0 6 2 2 Updated Apr 5, 2026
  • flu-seqneut-2025to2026 Public

    Near real-time data on the human neutralizing antibody landscape to influenza virus as of early 2026 to inform vaccine-strain selection

    jbloomlab/flu-seqneut-2025to2026’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Mar 12, 2026
  • flu-seqneut-2025 Public
    jbloomlab/flu-seqneut-2025’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Mar 9, 2026
  • ha-preference-shifts Public

    Comparison of amino-acid preferences across influenza HA subtypes

    jbloomlab/ha-preference-shifts’s past year of commit activity
    HTML 0 0 1 0 Updated Mar 8, 2026
  • flu_seqneut_H3N2_2023-2024 Public

    sequencing-based neutralization assay on H3N2 HA variants from 2023-2024

    jbloomlab/flu_seqneut_H3N2_2023-2024’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 3, 2026
  • jbloomlab.github.io Public

    A website for the Bloom lab

    jbloomlab/jbloomlab.github.io’s past year of commit activity
    Vue 1 0 0 0 Updated Mar 1, 2026
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