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Pull requests: malariagen/malariagen-data-python
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fix: restore original recursion limit after dendrogram computation
#1306
opened Apr 15, 2026 by
kunal-10-cloud
Contributor
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4 tasks done
fix: add retry, timeout, and backoff defaults for cloud storage access
#1304
opened Apr 15, 2026 by
khushthecoder
Contributor
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2 of 5 tasks
fix: expand CI coverage to full malariagen_data package and update codecov action
#1302
opened Apr 15, 2026 by
kunal-10-cloud
Contributor
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1 of 3 tasks
fix: replace hardcoded GCS cache keys with monthly-rotating dynamic keys
#1297
opened Apr 14, 2026 by
kunal-10-cloud
Contributor
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2 of 4 tasks
feat: add public cache_info() and clear_cache() API (fixes #1289)
#1295
opened Apr 14, 2026 by
khushthecoder
Contributor
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10 tasks done
Fix #1280: Optimize snp_calls_to_vcf() with vectorized GT formatting
#1294
opened Apr 14, 2026 by
khushthecoder
Contributor
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3 tasks
Fix: Sanitize user input passed to DataFrame.eval()/query() to prevent code injection
#1293
opened Apr 14, 2026 by
kunal-10-cloud
Contributor
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3 tasks done
fix: expose cohort size parameters in diversity_stats
#1290
opened Apr 13, 2026 by
adilraza99
Contributor
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fix: add DeprecationWarning to geneset() and snp_dataset()
#1286
opened Apr 12, 2026 by
Tanisha127
Contributor
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Fix #1283: Warn and handle missing FORMAT fields in snp_calls_to_vcf()
#1284
opened Apr 10, 2026 by
Yashsingh045
Contributor
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refactor: migrate karyotype tag loading to GCS and add simulated tests
#1278
opened Apr 8, 2026 by
adilraza99
Contributor
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add DeprecationWarning to geneset() and snp_dataset()
#1274
opened Apr 3, 2026 by
ZiadXI
Contributor
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feat: implement variant association analysis
#1272
opened Apr 3, 2026 by
31puneet
Contributor
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fix: suppress misleading KeyError chain in _locate_site_class`
#1270
opened Apr 2, 2026 by
blankirigaya
Contributor
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Add describe_method() for parameter-level API introspection
#1267
opened Mar 31, 2026 by
anushkaxg
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Add Afar1 species support for Anopheles farauti in the Pacific
#1266
opened Mar 31, 2026 by
iftiquar
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5 tasks
refactor: remove duplicate cache name constants in ag3.py
#1265
opened Mar 31, 2026 by
opreaDO
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Add describe_method() for structured parameter introspection
#1263
opened Mar 31, 2026 by
caiocrocha
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fix: raise ValueError on empty CNV HMM data instead of IndexError
#1258
opened Mar 31, 2026 by
ADAMSmugwe
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Add genomic summary helper functions for genotype data
#1256
opened Mar 30, 2026 by
cleberfc23
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